Applications

ProDy comes with two sets of applications that automate structural dynamics and sequence coevolution analysis:

• ProDy Applications
  • prody align
  • prody anm
  • prody biomol
  • prody blast
  • prody catdcd
  • prody contacts
  • prody eda
  • prody fetch
  • prody gnm
  • prody pca
  • prody select
• Evol Applications
  • evol coevol
  • evol conserv
  • evol fetch
  • evol filter
  • evol merge
  • evol occupancy
  • evol rankorder
  • evol refine
  • evol search

On Linux, when installing ProDy from source, application scripts are placed into a default folder that is included in PATH environment variable, e.g. /usr/local/bin/.

On Windows, installer places the scripts into the Scripts folder under Python distribution folder, e.g. C:\Python27\Scripts. You may need to add this path to PATH environment variable yourself.