ProDy 1.5 Series
- 1.5.1 (Dec 24, 2013)
- 1.5 (Dec 23, 2013)

Release Notes

v2.5.0 series come with new and improved sequence, structure, and dynamics analysis features. See release notes for details.

How to Cite

Bakan A, Meireles LM, Bahar I ProDy: Protein Dynamics Inferred from Theory and Experiments
Bioinformatics 2011 27(11):1575-1577.

Bakan A, Dutta A, Mao W, Liu Y, Chennubhotla C, Lezon TR, Bahar I Evol and ProDy for Bridging Protein Sequence Evolution and Structural Dynamics
Bioinformatics 2014 30(18):2681-2683.

Zhang S, Krieger JM, Zhang Y, Kaya C, Kaynak B, Mikulska-Ruminska K, Doruker P, Li H, Bahar I ProDy 2.0: Increased scale and scope after 10 years of protein dynamics modelling with Python
Bioinformatics 2021 37(20):3657-3659.

ProDy 1.5 Series¶

1.5.1 (Dec 24, 2013)
1.5 (Dec 23, 2013)

1.5.1 (Dec 24, 2013)¶

Changes:

PDBBlastRecord become picklable.

1.5 (Dec 23, 2013)¶

New Features:

buildDirectInfoMatrix() and calcMeff() are implemented for calculation of direct information from multiple sequence alignments.

showDirectInfoMatrix() and showSCAMatrix() functions are implemented for displaying coevolutionary data.

RTB is implemented for Rotations-Translations of Blocks calculations. Optional arguments also permit imANM calculations.

Availability:

Source is moved from lib/prody to prody.

Source code will be hosted only at GitHub.

Improvements:

DCDFile and parseDCD() support DCD files written by cpptraj.

Testing:

ProDy test command (prody test) and function prody.test() has been removed for easier maintenance of testing functions. See Testing ProDy for more information on how to test ProDy.