ProDy 1.6 Series
- 1.6.1 (May 31, 2015)
- 1.5 (Dec 23, 2013)

Release Notes

v2.5.0 series come with new and improved sequence, structure, and dynamics analysis features. See release notes for details.

How to Cite

Bakan A, Meireles LM, Bahar I ProDy: Protein Dynamics Inferred from Theory and Experiments
Bioinformatics 2011 27(11):1575-1577.

Bakan A, Dutta A, Mao W, Liu Y, Chennubhotla C, Lezon TR, Bahar I Evol and ProDy for Bridging Protein Sequence Evolution and Structural Dynamics
Bioinformatics 2014 30(18):2681-2683.

Zhang S, Krieger JM, Zhang Y, Kaya C, Kaynak B, Mikulska-Ruminska K, Doruker P, Li H, Bahar I ProDy 2.0: Increased scale and scope after 10 years of protein dynamics modelling with Python
Bioinformatics 2021 37(20):3657-3659.

ProDy 1.6 Series¶

1.6.1 (May 31, 2015)
1.5 (Dec 23, 2013)

1.6.1 (May 31, 2015)¶

Changes:

searchPfam() uses hmmer for given sequence inputs instead of pfam search.

1.5 (Dec 23, 2013)¶

New Features:

buildPCMatrix() is implemented for calculation of coevolution with PSICOV method from multiple sequence alignments.

specMergeMSA() is implemented for merging multiple sequence alignment files based on the species identifiers of sequences.

exANM is implemented for explicit membrane ANM calculations.

writeMembranePDB() is implemented for writing PDB structures of created membranes for exANM class.