All modules for which code is available

• Bio.Phylo.TreeConstruction
• prody
• prody.apps.evol_apps.evol_coevol
• prody.apps.evol_apps.evol_conserv
• prody.apps.evol_apps.evol_fetch
• prody.apps.evol_apps.evol_filter
• prody.apps.evol_apps.evol_merge
• prody.apps.evol_apps.evol_occupancy
• prody.apps.evol_apps.evol_rankorder
• prody.apps.evol_apps.evol_refine
• prody.apps.evol_apps.evol_search
• prody.apps.prody_apps.prody_align
• prody.apps.prody_apps.prody_anm
• prody.apps.prody_apps.prody_biomol
• prody.apps.prody_apps.prody_blast
• prody.apps.prody_apps.prody_catdcd
• prody.apps.prody_apps.prody_clustenm
• prody.apps.prody_apps.prody_contacts
• prody.apps.prody_apps.prody_fetch
• prody.apps.prody_apps.prody_gnm
• prody.apps.prody_apps.prody_pca
• prody.apps.prody_apps.prody_select
• prody.atomic.acceptor
• prody.atomic.angle
• prody.atomic.atom
• prody.atomic.atomgroup
• prody.atomic.atomic
• prody.atomic.atommap
• prody.atomic.bond
• prody.atomic.chain
• prody.atomic.crossterm
• prody.atomic.dihedral
• prody.atomic.donor
• prody.atomic.fields
• prody.atomic.flags
• prody.atomic.functions
• prody.atomic.hierview
• prody.atomic.improper
• prody.atomic.nbexclusion
• prody.atomic.pointer
• prody.atomic.residue
• prody.atomic.segment
• prody.atomic.select
• prody.atomic.selection
• prody.atomic.subset
• prody.chromatin.cluster
• prody.chromatin.functions
• prody.chromatin.hic
• prody.chromatin.norm
• prody.chromatin.straw
• prody.compounds.bird
• prody.compounds.ccd
• prody.compounds.functions
• prody.compounds.pdbligands
• prody.database.cath
• prody.database.dali
• prody.database.goa
• prody.database.pfam
• prody.database.quartataweb
• prody.database.uniprot
• prody.dynamics.adaptive
• prody.dynamics.analysis
• prody.dynamics.anm
• prody.dynamics.anmd
• prody.dynamics.clustenm
• prody.dynamics.compare
• prody.dynamics.editing
• prody.dynamics.essa
• prody.dynamics.exanm
• prody.dynamics.exgnm
• prody.dynamics.functions
• prody.dynamics.gamma
• prody.dynamics.gnm
• prody.dynamics.heatmapper
• prody.dynamics.imanm
• prody.dynamics.mechstiff
• prody.dynamics.mode
• prody.dynamics.modeset
• prody.dynamics.nma
• prody.dynamics.nmdfile
• prody.dynamics.pca
• prody.dynamics.perturb
• prody.dynamics.plotting
• prody.dynamics.rtb
• prody.dynamics.sampling
• prody.dynamics.signature
• prody.dynamics.vmdfile
• prody.ensemble.conformation
• prody.ensemble.ensemble
• prody.ensemble.functions
• prody.ensemble.pdbensemble
• prody.kdtree.kdtree
• prody.measure.contacts
• prody.measure.measure
• prody.measure.transform
• prody.proteins.blastpdb
• prody.proteins.ciffile
• prody.proteins.compare
• prody.proteins.dssp
• prody.proteins.emdfile
• prody.proteins.functions
• prody.proteins.header
• prody.proteins.interactions
• prody.proteins.localpdb
• prody.proteins.pdbclusters
• prody.proteins.pdbfile
• prody.proteins.starfile
• prody.proteins.stride
• prody.proteins.wwpdb
• prody.sequence.analysis
• prody.sequence.msa
• prody.sequence.msafile
• prody.sequence.plotting
• prody.sequence.sequence
• prody.trajectory.dcdfile
• prody.trajectory.frame
• prody.trajectory.psffile
• prody.trajectory.trajbase
• prody.trajectory.trajectory
• prody.trajectory.trajfile
• prody.utilities.TreeConstruction
• prody.utilities.catchall
• prody.utilities.checkers
• prody.utilities.doctools
• prody.utilities.drawtools
• prody.utilities.laptools
• prody.utilities.logger
• prody.utilities.misctools
• prody.utilities.pathtools
• prody.utilities.seqtools
• prody.utilities.settings